Sequence Similarity Clusters for the Entities in PDB 1P16

Entity #1 | Chains: A,B
mRNA capping enzyme alpha subunit protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34299
95 % 1 1 29431 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 1 1 28257
70 % 1 1 25443
50 % 1 1 21811
40 % 1 1 19231
30 % 1 1 16098
Entity #2 | Chains: C,D
phosphorylated peptide from C-terminal of RNA polymerase II protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20084
95 % 2 2 18214
90 % 2 2 17758
70 % 2 2 16422
50 % 2 2 14340
40 % 2 2 12793
30 % 2 2 10776

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures