Sequence Similarity Clusters for the Entities in PDB 1P16

Entity #1 | Chains: A,B
mRNA capping enzyme alpha subunit protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 34222
95 % 1 1 27419
90 % 1 1 26483
70 % 1 1 23981
50 % 1 1 20647
40 % 1 1 18329
30 % 1 1 15696
Entity #2 | Chains: C,D
phosphorylated peptide from C-terminal of RNA polymerase II protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25194
95 % 2 2 21477
90 % 2 2 20862
70 % 2 2 19153
50 % 2 2 16649
40 % 2 2 14861
30 % 2 2 12750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures