Sequence Similarity Clusters for the Entities in PDB 1P16

Entity #1 | Chains: A,B
mRNA capping enzyme alpha subunit protein, length: 395 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32651
95 % 1 1 26197 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 1 1 25330
70 % 1 1 23059
50 % 1 1 19899
40 % 1 1 17671
30 % 1 1 15129
Entity #2 | Chains: C,D
phosphorylated peptide from C-terminal of RNA polymerase II protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 24018
95 % 2 2 20493
90 % 2 2 19927
70 % 2 2 18356
50 % 2 2 15985
40 % 2 2 14280
30 % 2 2 12249

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.