Sequence Similarity Clusters for the Entities in PDB 1OZJ

Entity #1 | Chains: C
Smad binding element dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
Smad binding element dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
SMAD 3 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 9708
95 % 3 4 9828
90 % 3 4 9712
70 % 3 4 9263
50 % 4 13 2197
40 % 4 13 2189
30 % 4 13 2091

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures