Sequence Similarity Clusters for the Entities in PDB 1OZB

Entity #1 | Chains: A,B,C,D,E,F,G,H
Protein-export protein secB protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 5353
95 % 2 2 6032 Flexibility: No
Max RMSD: 1.8, Avg RMSD: 0.5
PDBFlex
90 % 2 2 6033
70 % 2 2 5883
50 % 2 2 5530
40 % 2 2 5193
30 % 2 2 4670
Entity #2 | Chains: I,J
Preprotein translocase secA subunit protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50080
95 % 1 1 37461 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 35762
70 % 1 1 31807
50 % 1 1 27226
40 % 1 1 24077
30 % 1 1 20504

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures