Sequence Similarity Clusters for the Entities in PDB 1OY3

Entity #1 | Chains: B,C
Transcription factor p65 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23242
95 % 1 2 20825 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 2 20203
70 % 1 2 18486
50 % 1 2 16029
40 % 1 2 14223
30 % 1 2 11968
Entity #2 | Chains: D
transcription factor inhibitor I-kappa-B-beta protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39571
95 % 1 2 33489 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 32031
70 % 1 2 28584
50 % 1 2 24420
40 % 1 2 21495
30 % 1 2 17944

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OY3 1 B, C Transcription factor p65 p65 dimerization domain 10090
2 1K3Z 1 A, B Transcription factor p65 p65 dimerization domain 10090