Sequence Similarity Clusters for the Entities in PDB 1OY3

Entity #1 | Chains: B,C
Transcription factor p65 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23167
95 % 1 2 20750 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 2 20134
70 % 1 2 18447
50 % 1 2 15996
40 % 1 2 14189
30 % 1 2 11948
Entity #2 | Chains: D
transcription factor inhibitor I-kappa-B-beta protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39462
95 % 1 2 33397 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 31937
70 % 1 2 28507
50 % 1 2 24358
40 % 1 2 21430
30 % 1 2 17890

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OY3 1 B, C Transcription factor p65 p65 dimerization domain 10090
2 1K3Z 1 A, B Transcription factor p65 p65 dimerization domain 10090