Sequence Similarity Clusters for the Entities in PDB 1OY3

Entity #1 | Chains: B,C
Transcription factor p65 protein, length: 136 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 22600
95 % 1 2 20224 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.5
PDBFlex
90 % 1 2 19645
70 % 1 2 18041
50 % 1 2 15672
40 % 1 2 13911
30 % 1 2 11685
Entity #2 | Chains: D
transcription factor inhibitor I-kappa-B-beta protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38644
95 % 1 2 32733 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 31338
70 % 1 2 28031
50 % 1 2 23970
40 % 1 2 21101
30 % 1 2 17600

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures