Sequence Similarity Clusters for the Entities in PDB 1OXQ

Entity #1 | Chains: A,B,C,D,E
Baculoviral IAP repeat-containing protein 7 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 3606
95 % 2 4 3123 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 8 11 1628
70 % 8 11 1641
50 % 14 23 1060
40 % 20 57 357
30 % 20 58 346
Entity #2 | Chains: F
AVPIAQKSE (Smac) peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.