Sequence Similarity Clusters for the Entities in PDB 1OXQ

Entity #1 | Chains: A,B,C,D,E
Baculoviral IAP repeat-containing protein 7 protein, length: 140 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 3854
95 % 2 4 3333 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 8 11 1746
70 % 8 11 1757
50 % 14 23 1117
40 % 20 57 416
30 % 20 58 396
Entity #2 | Chains: F
AVPIAQKSE (Smac) peptide protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures