Sequence Similarity Clusters for the Entities in PDB 1OXK

Entity #1 | Chains: A,C,E,G,I,K
Ypd1p protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3698
95 % 3 7 3797 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 7 3850
70 % 3 7 3795
50 % 3 7 3690
40 % 3 7 3561
30 % 3 7 3330
Entity #2 | Chains: B,D,F,H,J,L
SLN1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 9606
95 % 2 3 9740 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 9625
70 % 2 3 9183
50 % 2 3 8309
40 % 2 3 7617
30 % 160 256 116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures