Sequence Similarity Clusters for the Entities in PDB 1OXK

Entity #1 | Chains: A,C,E,G,I,K
Ypd1p protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 3620
95 % 3 7 3979 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 7 4031
70 % 3 7 3954
50 % 3 7 3857
40 % 3 7 3676
30 % 3 7 3367
Entity #2 | Chains: B,D,F,H,J,L
SLN1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 9803
95 % 2 3 9629 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 2 3 9502
70 % 2 3 9074
50 % 2 3 8272
40 % 2 3 7558
30 % 165 262 123

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures