Sequence Similarity Clusters for the Entities in PDB 1OXK

Entity #1 | Chains: A,C,E,G,I,K
Ypd1p protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3773
95 % 3 7 3871 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 7 3922
70 % 3 7 3868
50 % 3 7 3754
40 % 3 7 3618
30 % 3 7 3382
Entity #2 | Chains: B,D,F,H,J,L
SLN1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 9793
95 % 2 3 9893 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 9777
70 % 2 3 9324
50 % 2 3 8435
40 % 2 3 7736
30 % 162 261 115

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures