Sequence Similarity Clusters for the Entities in PDB 1OXK

Entity #1 | Chains: A,C,E,G,I,K
Ypd1p protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3830
95 % 3 7 3919 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 7 3977
70 % 3 7 3920
50 % 3 7 3808
40 % 3 7 3664
30 % 3 7 3424
Entity #2 | Chains: B,D,F,H,J,L
SLN1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 9964
95 % 2 3 10040 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 2 3 9920
70 % 2 3 9450
50 % 2 3 8548
40 % 2 3 7832
30 % 162 261 117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures