Sequence Similarity Clusters for the Entities in PDB 1OXK

Entity #1 | Chains: A,C,E,G,I,K
Ypd1p protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 3589
95 % 3 7 3705 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 3 7 3754
70 % 3 7 3694
50 % 3 7 3607
40 % 3 7 3478
30 % 3 7 3247
Entity #2 | Chains: B,D,F,H,J,L
SLN1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 9370
95 % 2 3 9504 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 2 3 9400
70 % 2 3 8960
50 % 2 3 8103
40 % 2 3 7435
30 % 154 245 117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.