Sequence Similarity Clusters for the Entities in PDB 1OXB

Entity #1 | Chains: A
Ypd1p protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 3676
95 % 5 7 3776 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 5 7 3829
70 % 5 7 3773
50 % 5 7 3672
40 % 5 7 3542
30 % 5 7 3311
Entity #2 | Chains: B
SLN1 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 9570
95 % 3 3 9705 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 3 3 9593
70 % 3 3 9155
50 % 3 3 8282
40 % 3 3 7591
30 % 178 256 114

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.