Sequence Similarity Clusters for the Entities in PDB 1OVA

Entity #1 | Chains: A
OVALBUMIN protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8268
95 % 1 5 6838 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 3.2
PDBFlex
90 % 1 5 6818
70 % 1 6 5025
50 % 1 6 4806
40 % 22 97 400
30 % 29 178 185
Entity #2 | Chains: B
OVALBUMIN protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 8268
95 % 2 5 6838 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 3.2
PDBFlex
90 % 2 5 6818
70 % 2 6 5025
50 % 2 6 4806
40 % 23 97 400
30 % 30 178 185
Entity #3 | Chains: C,D
OVALBUMIN protein, length: 386 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8268
95 % 3 5 6838 Flexibility: Medium
Max RMSD: 9.2, Avg RMSD: 3.2
PDBFlex
90 % 3 5 6818
70 % 3 6 5025
50 % 3 6 4806
40 % 24 97 400
30 % 31 178 185

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures