Sequence Similarity Clusters for the Entities in PDB 1OUZ

Entity #1 | Chains: C
Phage lambda H' site dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Integration Host Factor Alpha-subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 11271
95 % 5 7 10923 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 7 10758
70 % 5 7 10209
50 % 5 7 9177
40 % 29 49 791
30 % 29 50 781
Entity #5 | Chains: B
Integration Host Factor Beta-subunit protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9366
95 % 5 7 9342 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 7 9235
70 % 5 7 8886
50 % 5 7 8092
40 % 30 49 791
30 % 30 50 781

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1OWF 5 B Integration Host Factor beta-subunit 562
2 2HT0 6 B Integration host factor beta-subunit 562
3 1OWG 5 B Integration Host Factor beta-subunit 562
4 1IHF 5 B PROTEIN (INTEGRATION HOST FACTOR (BETA) (IHF)) 562
5 1OUZ 5 B Integration Host Factor Beta-subunit 562
6 5WFE 8 L Integration host factor subunit beta 562
7 5J0N 7 J, L Integration host factor subunit beta 1 562