Sequence Similarity Clusters for the Entities in PDB 1OUZ

Entity #1 | Chains: C
Phage lambda H' site dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Integration Host Factor Alpha-subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 10976
95 % 5 7 10649 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 7 10497
70 % 5 7 9992
50 % 5 7 9010
40 % 28 48 784
30 % 28 49 766
Entity #5 | Chains: B
Integration Host Factor Beta-subunit protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9117
95 % 5 7 9112 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 7 9025
70 % 5 7 8711
50 % 5 7 7947
40 % 29 48 784
30 % 29 49 766

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4P3V 1 A DNA-binding protein HU-beta 562
2 4N1V 1 A DNA-binding protein HU-beta 2134
3 5L8Z 1 A DNA-binding protein 2134
4 1B8Z 1 A, B PROTEIN (HISTONELIKE PROTEIN HU) 2336
5 5EKA 1 A DNA-binding protein HU DNA-binding protein HU from Thermus thermophilus. UniProtKB code: DBH_THET8 274
6 5FBM 1 A, B DNA-binding protein HU 1309
7 1RIY 1 A Hu DNA-binding protein 2336
8 1HUU 1 A, B, C PROTEIN HU 1422
9 4PT4 1 A, B DNA-binding protein HU homolog N terminal UNP residues 1-99 (dimerization domain and DNA binding domain) 1773
10 5LVT 1 A, B, C, D DNA-binding protein HU 1358
11 1OWF 4 A Integration Host Factor Alpha-subunit 562
12 1OWF 5 B Integration Host Factor beta-subunit 562
13 1P71 2 A, B DNA-binding protein HU 1167
14 4QJU 1 A, B DNA-binding protein HU 1280
15 2HT0 5 A Integration host factor alpha-subunit 562
16 2HT0 6 B Integration host factor beta-subunit 562
17 1OWG 4 A Integration Host Factor Alpha-subunit 562
18 1OWG 5 B Integration Host Factor beta-subunit 562
19 4DKY 1 A, B DNA-binding protein HU homolog N-terminal Bacterial histone-like domain, UNP residues 1-100 1773
20 1IHF 4 A PROTEIN (INTEGRATION HOST FACTOR (ALPHA) (IHF)) 562
21 1IHF 5 B PROTEIN (INTEGRATION HOST FACTOR (BETA) (IHF)) 562
22 1P78 2 A, B DNA-binding protein HU 1167
23 1MUL 1 A DNA binding protein HU-alpha 562
24 2IIE 4 A Integration host factor 562
25 2O97 1 A DNA-binding protein HU-alpha 562
26 2O97 2 B DNA-binding protein HU-beta 562
27 3RHI 1 A, B, C, D DNA-binding protein HU 1392
28 1OUZ 4 A Integration Host Factor Alpha-subunit 562
29 1OUZ 5 B Integration Host Factor Beta-subunit 562
30 4QJN 1 A, B, C, D DNA-binding protein HU 1280
31 2IIF 4 A Integration host factor 562
32 4YFT 1 A DNA-binding protein HU-beta 562
33 4YFT 4 C DNA-binding protein HU-alpha 562
34 4YEW 1 A DNA-binding protein HU-beta 562
35 4YEW 4 C DNA-binding protein HU-alpha 562
36 4YF0 1 A, B DNA-binding protein HU-alpha 562
37 1P51 2 A, B, C, D DNA-binding protein HU 1167
38 4YEX 1 A, C DNA-binding protein HU-alpha 562
39 4YFH 1 A, B DNA-binding protein HU-alpha 562
40 4YEY 1 A, C DNA-binding protein HU-alpha 562
41 5OGU 1 A, B DNA-binding protein 2134
42 5WFE 7 K Integration host factor subunit alpha 562
43 5WFE 8 L Integration host factor subunit beta 562
44 5J0N 6 I, K Integration host factor subunit alpha 1 562
45 5J0N 7 J, L Integration host factor subunit beta 1 562
46 1EXE 1 A, B TRANSCRIPTION FACTOR 1 10685
47 1WTU 1 A, B TRANSCRIPTION FACTOR 1 THIS PROTEIN IS THE BACILLUS SUBTILIS PHAGE SPO1-ENCODED TYPE II DNA-BINDING PROTEIN 10685
48 1HUE 1 A, B HU PROTEIN 1422