Sequence Similarity Clusters for the Entities in PDB 1OUZ

Entity #1 | Chains: C
Phage lambda H' site dna, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3' dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: E
5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*AP*GP*CP*AP*CP*C)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
Integration Host Factor Alpha-subunit protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 11271
95 % 5 7 10923 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 5 7 10758
70 % 5 7 10209
50 % 5 7 9177
40 % 29 49 791
30 % 29 50 781
Entity #5 | Chains: B
Integration Host Factor Beta-subunit protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 9366
95 % 5 7 9342 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 7 9235
70 % 5 7 8886
50 % 5 7 8092
40 % 30 49 791
30 % 30 50 781

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4P3V 1 A DNA-binding protein HU-beta 562
2 4N1V 1 A DNA-binding protein HU-beta 2134
3 5L8Z 1 A DNA-binding protein 2134
4 1B8Z 1 A, B PROTEIN (HISTONELIKE PROTEIN HU) 2336
5 5EKA 1 A DNA-binding protein HU DNA-binding protein HU from Thermus thermophilus. UniProtKB code: DBH_THET8 274
6 5FBM 1 A, B DNA-binding protein HU 1309
7 1RIY 1 A Hu DNA-binding protein 2336
8 1HUU 1 A, B, C PROTEIN HU 1422
9 4PT4 1 A, B DNA-binding protein HU homolog N terminal UNP residues 1-99 (dimerization domain and DNA binding domain) 1773
10 6N2L 1 A Histone family protein DNA-binding protein BuamA.00144.b.B1 152480
11 5LVT 1 A, B, C, D DNA-binding protein HU 1358
12 1OWF 4 A Integration Host Factor Alpha-subunit 562
13 1OWF 5 B Integration Host Factor beta-subunit 562
14 1P71 2 A, B DNA-binding protein HU 1167
15 4QJU 1 A, B DNA-binding protein HU 1280
16 2HT0 5 A Integration host factor alpha-subunit 562
17 2HT0 6 B Integration host factor beta-subunit 562
18 1OWG 4 A Integration Host Factor Alpha-subunit 562
19 1OWG 5 B Integration Host Factor beta-subunit 562
20 4DKY 1 A, B DNA-binding protein HU homolog N-terminal Bacterial histone-like domain, UNP residues 1-100 1773
21 1IHF 4 A PROTEIN (INTEGRATION HOST FACTOR (ALPHA) (IHF)) 562
22 1IHF 5 B PROTEIN (INTEGRATION HOST FACTOR (BETA) (IHF)) 562
23 1P78 2 A, B DNA-binding protein HU 1167
24 1MUL 1 A DNA binding protein HU-alpha 562
25 2IIE 4 A Integration host factor 562
26 2O97 1 A DNA-binding protein HU-alpha 562
27 2O97 2 B DNA-binding protein HU-beta 562
28 3RHI 1 A, B, C, D DNA-binding protein HU 1392
29 1OUZ 4 A Integration Host Factor Alpha-subunit 562
30 1OUZ 5 B Integration Host Factor Beta-subunit 562
31 4QJN 1 A, B, C, D DNA-binding protein HU 1280
32 2IIF 4 A Integration host factor 562
33 4YFT 1 A DNA-binding protein HU-beta 562
34 4YFT 4 C DNA-binding protein HU-alpha 562
35 4YEW 1 A DNA-binding protein HU-beta 562
36 4YEW 4 C DNA-binding protein HU-alpha 562
37 4YF0 1 A, B DNA-binding protein HU-alpha 562
38 1P51 2 A, B, C, D DNA-binding protein HU 1167
39 4YEX 1 A, C DNA-binding protein HU-alpha 562
40 4YFH 1 A, B DNA-binding protein HU-alpha 562
41 4YEY 1 A, C DNA-binding protein HU-alpha 562
42 5OGU 1 A, B DNA-binding protein 2134
43 5WFE 7 K Integration host factor subunit alpha 562
44 5WFE 8 L Integration host factor subunit beta 562
45 5J0N 6 I, K Integration host factor subunit alpha 1 562
46 5J0N 7 J, L Integration host factor subunit beta 1 562
47 1EXE 1 A, B TRANSCRIPTION FACTOR 1 10685
48 1WTU 1 A, B TRANSCRIPTION FACTOR 1 THIS PROTEIN IS THE BACILLUS SUBTILIS PHAGE SPO1-ENCODED TYPE II DNA-BINDING PROTEIN 10685
49 1HUE 1 A, B HU PROTEIN 1422