Sequence Similarity Clusters for the Entities in PDB 1OUP

Entity #1 | Chains: C,D,F
5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
5'-D(*GP*CP*GP*AP*TP*C)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: G
5'-D(P*GP*C)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A,B
Nuclease protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12951
95 % 2 3 10513 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 2 3 10374
70 % 6 7 6215
50 % 6 7 5815
40 % 6 7 5442
30 % 6 7 4886

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.