Sequence Similarity Clusters for the Entities in PDB 1OTU

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 16863
95 % 37 40 522 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 37 40 554
70 % 38 41 552
50 % 38 41 601
40 % 39 43 603
30 % 39 43 596
Entity #2 | Chains: C,E
Fab fragment (Heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 442
95 % 35 37 613 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 36 38 622
70 % 2081 2222 2
50 % 4294 4587 1
40 % 4294 4587 1
30 % 5073 5392 1
Entity #3 | Chains: D,F
Fab fragment (Light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 443
95 % 35 37 614 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 134 145 141
70 % 2117 2264 1
50 % 4295 4587 1
40 % 4295 4587 1
30 % 5074 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.