Sequence Similarity Clusters for the Entities in PDB 1OTU

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17382
95 % 37 40 552 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 37 40 581
70 % 38 41 572
50 % 38 41 615
40 % 39 43 622
30 % 39 43 607
Entity #2 | Chains: C,E
Fab fragment (Heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 453
95 % 35 37 628 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 36 38 639
70 % 2166 2311 2
50 % 4480 4781 1
40 % 4480 4781 1
30 % 5308 5635 1
Entity #3 | Chains: D,F
Fab fragment (Light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 454
95 % 35 37 629 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 135 146 143
70 % 2211 2362 1
50 % 4481 4781 1
40 % 4481 4781 1
30 % 5309 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures