Sequence Similarity Clusters for the Entities in PDB 1OTU

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17988
95 % 37 40 571 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 37 40 599
70 % 38 41 594
50 % 38 41 633
40 % 39 43 636
30 % 39 43 622
Entity #2 | Chains: C,E
Fab fragment (Heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 464
95 % 35 37 641 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 36 38 650
70 % 2264 2424 2
50 % 4680 5011 1
40 % 4680 5011 1
30 % 5582 5941 1
Entity #3 | Chains: D,F
Fab fragment (Light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 465
95 % 35 37 642 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 137 148 144
70 % 2308 2474 1
50 % 4681 5011 1
40 % 4681 5011 1
30 % 5583 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures