Sequence Similarity Clusters for the Entities in PDB 1OTU

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17692
95 % 37 40 564 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 37 40 593
70 % 38 41 580
50 % 38 41 621
40 % 39 43 629
30 % 39 43 613
Entity #2 | Chains: C,E
Fab fragment (Heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 459
95 % 35 37 637 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 36 38 647
70 % 2214 2366 2
50 % 4577 4892 1
40 % 4577 4892 1
30 % 5417 5759 1
Entity #3 | Chains: D,F
Fab fragment (Light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 460
95 % 35 37 638 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 137 148 140
70 % 2258 2416 1
50 % 4578 4892 1
40 % 4578 4892 1
30 % 5418 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures