Sequence Similarity Clusters for the Entities in PDB 1OTU

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 2808
95 % 37 40 578 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 37 40 610
70 % 38 41 599
50 % 38 41 641
40 % 39 43 654
30 % 39 43 649
Entity #2 | Chains: C,E
Fab fragment (Heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 520
95 % 35 37 648 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 36 38 654
70 % 2331 2511 2
50 % 4807 5180 1
40 % 5380 5834 1
30 % 6690 7269 1
Entity #3 | Chains: D,F
Fab fragment (Light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 519
95 % 35 37 647 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 137 148 146
70 % 2366 2553 1
50 % 4808 5180 1
40 % 5381 5834 1
30 % 6691 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures