Sequence Similarity Clusters for the Entities in PDB 1OTS

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2810
95 % 3 40 578 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 3 40 609
70 % 3 41 599
50 % 3 41 641
40 % 3 43 653
30 % 3 43 647
Entity #2 | Chains: C,E
Fab fragment (heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 520
95 % 3 37 648 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 4 38 653
70 % 1739 2497 2
50 % 3603 5152 1
40 % 4090 5806 1
30 % 5094 7240 1
Entity #3 | Chains: D,F
Fab fragment (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 519
95 % 3 37 647 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 70 148 145
70 % 1771 2538 1
50 % 3604 5152 1
40 % 4091 5806 1
30 % 5095 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures