Sequence Similarity Clusters for the Entities in PDB 1OTS

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 3933
95 % 3 40 564 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 3 40 593
70 % 3 41 580
50 % 3 41 621
40 % 3 43 629
30 % 3 43 613
Entity #2 | Chains: C,E
Fab fragment (heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 459
95 % 3 37 637 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 4 38 647
70 % 1661 2366 2
50 % 3447 4892 1
40 % 3447 4892 1
30 % 4050 5759 1
Entity #3 | Chains: D,F
Fab fragment (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 460
95 % 3 37 638 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 70 148 140
70 % 1700 2416 1
50 % 3448 4892 1
40 % 3448 4892 1
30 % 4051 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures