Sequence Similarity Clusters for the Entities in PDB 1OTS

Entity #1 | Chains: A,B
Voltage-gated ClC-type chloride channel eriC protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 3837
95 % 3 40 539 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 3 40 573
70 % 3 41 568
50 % 3 41 612
40 % 3 43 618
30 % 3 43 608
Entity #2 | Chains: C,E
Fab fragment (heavy chain) protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 448
95 % 3 37 623 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.5
PDBFlex
90 % 4 38 634
70 % 1593 2282 2
50 % 3304 4717 1
40 % 3304 4717 1
30 % 3896 5571 1
Entity #3 | Chains: D,F
Fab fragment (light chain) protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 37 449
95 % 3 37 624 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 68 145 144
70 % 1629 2329 1
50 % 3305 4717 1
40 % 3305 4717 1
30 % 3897 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.