Sequence Similarity Clusters for the Entities in PDB 1OTC

Entity #1 | Chains: D
DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (TELOMERE-BINDING PROTEIN ALPHA SUBUNIT) protein, length: 495 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 3686
95 % 14 15 4478 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 14 15 4517
70 % 14 15 4428
50 % 14 15 4252
40 % 14 15 4061
30 % 14 15 3764
Entity #3 | Chains: B
PROTEIN (TELOMERE-BINDING PROTEIN BETA SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39411
95 % 2 2 30513 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 29424
70 % 2 2 26504
50 % 2 2 22656
40 % 2 2 19951
30 % 2 2 16927

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures