Sequence Similarity Clusters for the Entities in PDB 1OTC

Entity #1 | Chains: D
DNA (5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
PROTEIN (TELOMERE-BINDING PROTEIN ALPHA SUBUNIT) protein, length: 495 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 15 3539
95 % 14 15 4323 Flexibility: Low
Max RMSD: 12.1, Avg RMSD: 2.0
PDBFlex
90 % 14 15 4352
70 % 14 15 4272
50 % 14 15 4113
40 % 14 15 3938
30 % 14 15 3651
Entity #3 | Chains: B
PROTEIN (TELOMERE-BINDING PROTEIN BETA SUBUNIT) protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38124
95 % 2 2 29563 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 2 2 28534
70 % 2 2 25752
50 % 2 2 22036
40 % 2 2 19421
30 % 2 2 16484

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.