Sequence Similarity Clusters for the Entities in PDB 1OT8

Entity #1 | Chains: A,B,C
Neurogenic locus Notch protein protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27777
95 % 1 1 24472 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 1 1 23625
70 % 3 6 6726
50 % 3 6 6240
40 % 3 6 5793
30 % 134 357 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YYH 1 A, B Notch 1, ankyrin domain ankyrin domain 9606
2 2HE0 1 A, B Notch1 preproprotein variant Ankyrin Domain, residues 1873-2115 9606
3 1OT8 1 A, B, C Neurogenic locus Notch protein Ankyrin Domain 7227
4 2F8X 4 K Neurogenic locus notch homolog protein 1 [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] 9606
5 3V79 1 K Neurogenic locus notch homolog protein 1 9606
6 3NBN 2 B, E Neurogenic locus notch homolog protein 1 residues 1872-2126 9606