Sequence Similarity Clusters for the Entities in PDB 1ORQ

Entity #1 | Chains: A
6E1 Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60541
95 % 19 20 2814 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 114 145 142
70 % 2063 2327 1
50 % 4183 4713 1
40 % 4183 4713 1
30 % 4980 5567 1
Entity #2 | Chains: B
6E1 Fab heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60083
95 % 1 1 42213
90 % 19 20 2130
70 % 2022 2280 2
50 % 4184 4713 1
40 % 4184 4713 1
30 % 4981 5567 1
Entity #3 | Chains: C
potassium channel protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59736
95 % 1 2 22764 Flexibility: Medium
Max RMSD: 7.4, Avg RMSD: 5.1
PDBFlex
90 % 1 2 22091
70 % 1 2 20257
50 % 1 2 17554
40 % 1 2 15660
30 % 1 2 13391

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.