Sequence Similarity Clusters for the Entities in PDB 1ORQ

Entity #1 | Chains: A
6E1 Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61738
95 % 19 20 2881 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 116 148 140
70 % 2143 2416 1
50 % 4344 4892 1
40 % 4344 4892 1
30 % 5153 5759 1
Entity #2 | Chains: B
6E1 Fab heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61262
95 % 1 1 43015
90 % 19 20 2191
70 % 2099 2366 2
50 % 4345 4892 1
40 % 4345 4892 1
30 % 5154 5759 1
Entity #3 | Chains: C
potassium channel protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60913
95 % 1 2 23227 Flexibility: Medium
Max RMSD: 7.4, Avg RMSD: 5.1
PDBFlex
90 % 1 2 22519
70 % 1 2 20651
50 % 1 2 17881
40 % 1 2 15936
30 % 1 2 13622

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures