Sequence Similarity Clusters for the Entities in PDB 1ORQ

Entity #1 | Chains: A
6E1 Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62639
95 % 19 20 2929 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 116 148 144
70 % 2194 2479 1
50 % 4449 5021 1
40 % 4449 5021 1
30 % 5320 5951 1
Entity #2 | Chains: B
6E1 Fab heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62156
95 % 1 1 43616
90 % 19 20 2232
70 % 2150 2429 2
50 % 4450 5021 1
40 % 4450 5021 1
30 % 5321 5951 1
Entity #3 | Chains: C
potassium channel protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61801
95 % 1 2 23584 Flexibility: Medium
Max RMSD: 7.4, Avg RMSD: 5.1
PDBFlex
90 % 1 2 22860
70 % 1 2 20945
50 % 1 2 18111
40 % 1 2 16137
30 % 1 2 13794

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures