Sequence Similarity Clusters for the Entities in PDB 1ORQ

Entity #1 | Chains: A
6E1 Fab light chain protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56857
95 % 17 18 3448 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 116 148 145
70 % 2227 2538 1
50 % 4526 5152 1
40 % 5079 5806 1
30 % 6342 7240 1
Entity #2 | Chains: B
6E1 Fab heavy chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56858
95 % 1 1 46608
90 % 20 21 2121
70 % 2193 2497 2
50 % 4527 5152 1
40 % 5080 5806 1
30 % 6343 7240 1
Entity #3 | Chains: C
potassium channel protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56859
95 % 1 2 24308 Flexibility: Medium
Max RMSD: 7.4, Avg RMSD: 5.1
PDBFlex
90 % 1 2 23499
70 % 1 2 21383
50 % 1 2 18395
40 % 1 2 16256
30 % 1 2 13624

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures