Sequence Similarity Clusters for the Entities in PDB 1ORP

Entity #1 | Chains: B
5'-D(*AP*AP*GP*AP*CP*AP*TP*GP*GP*AP*C)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*T)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
Endonuclease III protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38050
95 % 2 3 24874 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 3 24031
70 % 2 3 21774
50 % 2 3 18723
40 % 2 3 16541
30 % 2 3 13864

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures