Sequence Similarity Clusters for the Entities in PDB 1OQS

Entity #1 | Chains: A,C,E,G
Phospholipase A2 RV-7 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19424
95 % 1 1 17718 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 5 7966
70 % 5 7 4908
50 % 93 181 154
40 % 153 307 103
30 % 153 307 117
Entity #2 | Chains: B,D,F,H
Phospholipase A2 RV-4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 6581
95 % 3 5 6332 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 5 6322
70 % 3 5 6152
50 % 94 181 154
40 % 154 307 103
30 % 154 307 117

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures