Sequence Similarity Clusters for the Entities in PDB 1OQS

Entity #1 | Chains: A,C,E,G
Phospholipase A2 RV-7 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23974
95 % 1 1 20488 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 5 5 8080
70 % 5 6 5241
50 % 93 181 146
40 % 153 307 100
30 % 153 307 112
Entity #2 | Chains: B,D,F,H
Phospholipase A2 RV-4 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23975
95 % 1 1 20489 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 5 6185
70 % 3 5 6031
50 % 94 181 146
40 % 154 307 100
30 % 154 307 112

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures