Sequence Similarity Clusters for the Entities in PDB 1OQO

Entity #1 | Chains: A,B
immunoglobulin gamma-1 heavy chain constant region protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 542
95 % 63 160 112 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.4
PDBFlex
90 % 68 169 91
70 % 69 170 107
50 % 74 181 141
40 % 74 181 153
30 % 2418 5759 1
Entity #2 | Chains: C,D
Minimized version of Protein A (Z34C) protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4286
95 % 3 8 5075 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 8 5088
70 % 3 8 4970
50 % 3 9 4387
40 % 3 9 4183
30 % 3 9 3855

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures