Sequence Similarity Clusters for the Entities in PDB 1OQO

Entity #1 | Chains: A,B
immunoglobulin gamma-1 heavy chain constant region protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 16 1264
95 % 65 167 111 Flexibility: Low
Max RMSD: 9.9, Avg RMSD: 1.5
PDBFlex
90 % 70 176 94
70 % 71 177 107
50 % 76 188 139
40 % 76 188 154
30 % 3162 7269 1
Entity #2 | Chains: C,D
Minimized version of Protein A (Z34C) protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4650
95 % 3 8 4947 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 8 4986
70 % 3 8 4856
50 % 3 9 4347
40 % 3 9 4059
30 % 3 9 3678

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures