Sequence Similarity Clusters for the Entities in PDB 1OQO

Entity #1 | Chains: A,B
immunoglobulin gamma-1 heavy chain constant region protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 25 608
95 % 55 143 117 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.4
PDBFlex
90 % 59 149 116
70 % 60 150 131
50 % 63 157 149
40 % 63 157 167
30 % 2206 5290 1
Entity #2 | Chains: C,D
Minimized version of Protein A (Z34C) protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4206
95 % 3 7 4995 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 7 5016
70 % 3 7 4960
50 % 3 8 4463
40 % 3 8 4252
30 % 3 8 3901

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.