Sequence Similarity Clusters for the Entities in PDB 1OQO

Entity #1 | Chains: A,B
immunoglobulin gamma-1 heavy chain constant region protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 28 532
95 % 63 160 93 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.4
PDBFlex
90 % 68 169 89
70 % 69 170 105
50 % 72 179 138
40 % 72 179 152
30 % 2337 5606 1
Entity #2 | Chains: C,D
Minimized version of Protein A (Z34C) protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4210
95 % 3 8 4983 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 8 5001
70 % 3 8 4889
50 % 3 9 4319
40 % 3 9 4124
30 % 3 9 3803

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.