Sequence Similarity Clusters for the Entities in PDB 1OQO

Entity #1 | Chains: A,B
immunoglobulin gamma-1 heavy chain constant region protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 26 565
95 % 63 155 108 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.5
PDBFlex
90 % 68 164 88
70 % 69 165 104
50 % 72 174 139
40 % 72 174 150
30 % 2265 5461 1
Entity #2 | Chains: C,D
Minimized version of Protein A (Z34C) protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4133
95 % 3 8 4909 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 8 4925
70 % 3 8 4824
50 % 3 9 4269
40 % 3 9 4076
30 % 3 9 3764

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.