Sequence Similarity Clusters for the Entities in PDB 1OQO

Entity #1 | Chains: A,B
immunoglobulin gamma-1 heavy chain constant region protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 31 475
95 % 64 164 114 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 1.4
PDBFlex
90 % 69 173 97
70 % 70 174 108
50 % 75 185 139
40 % 75 185 151
30 % 2523 5941 1
Entity #2 | Chains: C,D
Minimized version of Protein A (Z34C) protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 4364
95 % 3 8 5155 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 8 5176
70 % 3 8 5052
50 % 3 9 4457
40 % 3 9 4238
30 % 3 9 3912

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures