Sequence Similarity Clusters for the Entities in PDB 1OQE

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
Tumor necrosis factor ligand superfamily member 13B, soluble form protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 294
95 % 5 8 368 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 5 8 391
70 % 5 8 425
50 % 5 8 492
40 % 5 8 533
30 % 5 8 530
Entity #2 | Chains: K,L,M,N,O,P,Q,R
Tumor necrosis factor receptor superfamily member 13C protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10382
95 % 1 1 10390 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 1 10264
70 % 1 1 9736
50 % 1 1 8810
40 % 1 1 8071
30 % 1 1 7123

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures