Sequence Similarity Clusters for the Entities in PDB 1OQE

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
Tumor necrosis factor ligand superfamily member 13B, soluble form protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 287
95 % 4 7 356 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 4 7 381
70 % 4 7 419
50 % 4 7 494
40 % 4 7 537
30 % 4 7 533
Entity #2 | Chains: K,L,M,N,O,P,Q,R
Tumor necrosis factor receptor superfamily member 13C protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10181
95 % 1 1 10216 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 1 1 10093
70 % 1 1 9580
50 % 1 1 8672
40 % 1 1 7951
30 % 1 1 7018

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures