Sequence Similarity Clusters for the Entities in PDB 1OQD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
Tumor necrosis factor ligand superfamily member 13B, soluble form protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 315
95 % 4 8 364 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 4 8 389
70 % 4 8 426
50 % 4 8 496
40 % 4 8 542
30 % 4 8 550
Entity #2 | Chains: K,L,M,N,O,P,Q,R
Tumor necrosis factor receptor superfamily member 17 protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9098
95 % 1 1 9037 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 1 8938
70 % 1 1 8585
50 % 1 1 7844
40 % 1 1 7198
30 % 1 1 6274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures