Sequence Similarity Clusters for the Entities in PDB 1OQD

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J
Tumor necrosis factor ligand superfamily member 13B, soluble form protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 260
95 % 2 6 363 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.3
PDBFlex
90 % 2 6 386
70 % 2 6 423
50 % 2 6 502
40 % 2 6 545
30 % 2 6 544
Entity #2 | Chains: K,L,M,N,O,P,Q,R
Tumor necrosis factor receptor superfamily member 17 protein, length: 39 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9855
95 % 1 1 9926 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 1 9814
70 % 1 1 9337
50 % 1 1 8443
40 % 1 1 7738
30 % 1 1 6838

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.