Sequence Similarity Clusters for the Entities in PDB 1OPH

Entity #1 | Chains: A
Alpha-1-antitrypsin precursor protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41837
95 % 9 28 2055 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.7
PDBFlex
90 % 9 28 2106
70 % 9 28 2129
50 % 26 59 804
40 % 69 136 281
30 % 84 199 186
Entity #2 | Chains: B
Trypsinogen, cationic precursor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 400 428 43
95 % 443 474 32 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 443 474 35
70 % 514 562 20
50 % 617 714 16
40 % 1488 1912 4
30 % 1496 1926 7

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures