Sequence Similarity Clusters for the Entities in PDB 1OPH

Entity #1 | Chains: A
Alpha-1-antitrypsin precursor protein, length: 394 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34924
95 % 9 28 1871 Flexibility: Medium
Max RMSD: 17.3, Avg RMSD: 4.9
PDBFlex
90 % 9 28 1913
70 % 9 28 1929
50 % 19 50 879
40 % 52 99 411
30 % 70 180 188
Entity #2 | Chains: B
Trypsinogen, cationic precursor protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60562
95 % 441 471 18 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 441 471 20
70 % 511 557 19
50 % 614 708 14
40 % 1456 1863 4
30 % 1465 1885 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures