Sequence Similarity Clusters for the Entities in PDB 1OPG

Entity #1 | Chains: L
OPG2 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42298
95 % 4 31 1390 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 6 39 1077
70 % 369 2479 1
50 % 755 5021 1
40 % 755 5021 1
30 % 853 5951 1
Entity #2 | Chains: H
OPG2 FAB (HEAVY CHAIN) protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41183
95 % 2 2 31542 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 30379
70 % 368 2429 2
50 % 756 5021 1
40 % 756 5021 1
30 % 854 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures