Sequence Similarity Clusters for the Entities in PDB 1OPG

Entity #1 | Chains: L
OPG2 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41429
95 % 4 29 1634 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 6 37 1194
70 % 344 2392 1
50 % 704 4843 1
40 % 704 4843 1
30 % 765 5705 1
Entity #2 | Chains: H
OPG2 FAB (HEAVY CHAIN) protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40335
95 % 2 2 30940 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 29814
70 % 343 2342 2
50 % 705 4843 1
40 % 705 4843 1
30 % 766 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures