Sequence Similarity Clusters for the Entities in PDB 1OPG

Entity #1 | Chains: L
OPG2 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40809
95 % 4 29 1613 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 6 37 1178
70 % 331 2327 1
50 % 676 4713 1
40 % 676 4713 1
30 % 735 5567 1
Entity #2 | Chains: H
OPG2 FAB (HEAVY CHAIN) protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39740
95 % 2 2 30494 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 29395
70 % 330 2280 2
50 % 677 4713 1
40 % 677 4713 1
30 % 736 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.