Sequence Similarity Clusters for the Entities in PDB 1OPG

Entity #1 | Chains: L
OPG2 FAB (LIGHT CHAIN) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39625
95 % 4 25 1834 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 6 33 1280
70 % 262 1841 2
50 % 647 4537 1
40 % 647 4537 1
30 % 701 5342 1
Entity #2 | Chains: H
OPG2 FAB (HEAVY CHAIN) protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38583
95 % 2 2 29624 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 2 2 28562
70 % 316 2197 1
50 % 648 4537 1
40 % 648 4537 1
30 % 702 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.