Sequence Similarity Clusters for the Entities in PDB 1OPF

Entity #1 | Chains: A,B,C,D,E,F
MATRIX PORIN OUTER MEMBRANE PROTEIN F protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 24 367
95 % 28 35 401 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 28 35 430
70 % 28 35 476
50 % 41 57 295
40 % 41 57 310
30 % 41 57 319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.