Sequence Similarity Clusters for the Entities in PDB 1OP9

Entity #1 | Chains: A
HL6 camel VHH fragment protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68449
95 % 1 2 34606 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 33060
70 % 113 386 9
50 % 154 583 7
40 % 240 936 5
30 % 269 1065 7
Entity #2 | Chains: B
Lysozyme C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 45 764
95 % 170 207 141 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.4
PDBFlex
90 % 170 207 150
70 % 659 955 7
50 % 662 963 8
40 % 672 997 11
30 % 672 997 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures