Sequence Similarity Clusters for the Entities in PDB 1OP9

Entity #1 | Chains: A
HL6 camel VHH fragment protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69698
95 % 1 2 35220 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 33621
70 % 115 399 9
50 % 156 599 6
40 % 242 956 5
30 % 271 1085 7
Entity #2 | Chains: B
Lysozyme C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 45 778
95 % 170 207 142 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.4
PDBFlex
90 % 170 207 151
70 % 661 961 7
50 % 664 969 8
40 % 674 1003 11
30 % 674 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures