Sequence Similarity Clusters for the Entities in PDB 1OP9

Entity #1 | Chains: A
HL6 camel VHH fragment protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67065
95 % 1 2 33895 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 32406
70 % 108 372 9
50 % 149 566 7
40 % 235 916 5
30 % 263 1042 7
Entity #2 | Chains: B
Lysozyme C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 45 746
95 % 170 207 136 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 170 207 145
70 % 648 942 7
50 % 651 950 8
40 % 661 984 11
30 % 661 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.