Sequence Similarity Clusters for the Entities in PDB 1OP9

Entity #1 | Chains: A
HL6 camel VHH fragment protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51453
95 % 1 2 29149 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 27989
70 % 118 411 9
50 % 161 613 6
40 % 925 5834 1
30 % 1139 7269 1
Entity #2 | Chains: B
Lysozyme C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 116 140 200
95 % 170 207 143 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 170 207 154
70 % 674 974 7
50 % 677 982 8
40 % 688 1017 10
30 % 688 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures