Sequence Similarity Clusters for the Entities in PDB 1OP9

Entity #1 | Chains: A
HL6 camel VHH fragment protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66041
95 % 1 2 33400 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 31948
70 % 103 350 9
50 % 142 540 8
40 % 227 887 5
30 % 255 1013 7
Entity #2 | Chains: B
Lysozyme C protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 45 737
95 % 170 207 135 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 170 207 144
70 % 642 933 7
50 % 645 941 7
40 % 655 975 11
30 % 655 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.