Sequence Similarity Clusters for the Entities in PDB 1OP8

Entity #1 | Chains: A,B,C,D,E,F
Granzyme A protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 12815
95 % 2 2 10496 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 10363
70 % 2 2 9854
50 % 2 2 8938
40 % 1529 1698 4
30 % 1652 1848 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures