Sequence Similarity Clusters for the Entities in PDB 1OP5

Entity #1 | Chains: K,L
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1004
95 % 13 15 1385 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 591 693 3
70 % 1930 2264 1
50 % 3915 4587 1
40 % 3915 4587 1
30 % 4626 5394 1
Entity #2 | Chains: H,M
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1299
95 % 13 14 1700 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.7
PDBFlex
90 % 13 15 1402
70 % 1895 2222 2
50 % 3916 4587 1
40 % 3916 4587 1
30 % 4627 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.