Sequence Similarity Clusters for the Entities in PDB 1OP5

Entity #1 | Chains: K,L
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 1083
95 % 13 15 1469 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 674 788 2
70 % 2099 2474 1
50 % 4257 5011 1
40 % 4257 5011 1
30 % 5086 5941 1
Entity #2 | Chains: H,M
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 13 1401
95 % 13 14 1825 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.8
PDBFlex
90 % 13 15 1491
70 % 2056 2424 2
50 % 4258 5011 1
40 % 4258 5011 1
30 % 5087 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures