Sequence Similarity Clusters for the Entities in PDB 1OP3

Entity #1 | Chains: K,L
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 1083
95 % 2 15 1469 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 118 788 2
70 % 362 2474 1
50 % 741 5011 1
40 % 741 5011 1
30 % 837 5941 1
Entity #2 | Chains: H,M
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1401
95 % 2 14 1825 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.8
PDBFlex
90 % 2 15 1491
70 % 361 2424 2
50 % 742 5011 1
40 % 742 5011 1
30 % 838 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures