Sequence Similarity Clusters for the Entities in PDB 1OP3

Entity #1 | Chains: K,L
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 15 1252
95 % 2 15 1480 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 126 780 2
70 % 369 2553 1
50 % 757 5180 1
40 % 923 5834 1
30 % 1137 7269 1
Entity #2 | Chains: H,M
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 13 1634
95 % 2 14 1871 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.7
PDBFlex
90 % 2 15 1521
70 % 369 2511 2
50 % 758 5180 1
40 % 924 5834 1
30 % 1138 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures