Sequence Similarity Clusters for the Entities in PDB 1OOP

Entity #1 | Chains: A
Coat protein VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55590
95 % 1 1 39660
90 % 1 2 27382
70 % 1 6 10894
50 % 3 14 4337
40 % 48 155 276
30 % 48 155 284
Entity #2 | Chains: B
Coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56494
95 % 1 2 28849 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 27854
70 % 3 15 4258
50 % 46 157 295
40 % 46 157 309
30 % 60 192 164
Entity #3 | Chains: C
Coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57682
95 % 1 2 29437 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 28416
70 % 3 15 4268
50 % 48 164 241
40 % 48 166 257
30 % 63 203 149
Entity #4 | Chains: D
Coat protein VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70524
95 % 1 2 35387 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 3 12 6002
70 % 22 87 551
50 % 41 122 423
40 % 42 123 447
30 % 42 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.