Sequence Similarity Clusters for the Entities in PDB 1OOP

Entity #1 | Chains: A
Coat protein VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 46832
95 % 1 1 38920
90 % 1 2 36483
70 % 1 6 12576
50 % 18 57 1052
40 % 47 160 294
30 % 47 160 312
Entity #2 | Chains: B
Coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54172
95 % 1 2 27179 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 26168
70 % 3 15 4675
50 % 45 160 341
40 % 45 160 367
30 % 60 197 180
Entity #3 | Chains: C
Coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54178
95 % 1 2 26437
90 % 1 2 27189
70 % 3 15 4478
50 % 47 169 254
40 % 47 171 279
30 % 63 210 164
Entity #4 | Chains: D
Coat protein VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 30430
95 % 1 2 26485
90 % 3 12 5569
70 % 22 87 594
50 % 40 122 457
40 % 41 123 487
30 % 41 123 487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures