Sequence Similarity Clusters for the Entities in PDB 1OOP

Entity #1 | Chains: A
Coat protein VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57093
95 % 1 1 40758
90 % 1 2 28171
70 % 1 6 11220
50 % 3 14 4473
40 % 47 159 276
30 % 47 159 285
Entity #2 | Chains: B
Coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58028
95 % 1 2 29696 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 28650
70 % 3 15 4384
50 % 45 159 312
40 % 45 159 326
30 % 59 194 165
Entity #3 | Chains: C
Coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59252
95 % 1 2 30294
90 % 1 2 29224
70 % 3 15 4394
50 % 47 168 243
40 % 47 170 261
30 % 62 209 147
Entity #4 | Chains: D
Coat protein VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72531
95 % 1 2 36336
90 % 3 12 6179
70 % 22 87 571
50 % 40 122 440
40 % 41 123 464
30 % 41 123 461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures