Sequence Similarity Clusters for the Entities in PDB 1OOP

Entity #1 | Chains: A
Coat protein VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56381
95 % 1 1 40234
90 % 1 2 27847
70 % 1 6 11102
50 % 3 14 4407
40 % 47 158 274
30 % 47 158 282
Entity #2 | Chains: B
Coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57303
95 % 1 2 29343 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 28317
70 % 3 15 4323
50 % 45 159 294
40 % 45 159 310
30 % 59 194 165
Entity #3 | Chains: C
Coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58515
95 % 1 2 29934 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 28882
70 % 3 15 4333
50 % 47 167 239
40 % 47 169 255
30 % 62 208 146
Entity #4 | Chains: D
Coat protein VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71649
95 % 1 2 35883
90 % 3 12 6091
70 % 22 87 558
50 % 40 122 428
40 % 41 123 455
30 % 41 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.