Sequence Similarity Clusters for the Entities in PDB 1OOP

Entity #1 | Chains: A
Coat protein VP1 protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52683
95 % 1 1 37530
90 % 1 2 25933
70 % 1 6 10293
50 % 3 14 4099
40 % 47 147 271
30 % 47 147 276
Entity #2 | Chains: B
Coat protein VP2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53559
95 % 1 2 27314
90 % 1 2 26390
70 % 3 15 4003
50 % 45 150 286
40 % 45 150 304
30 % 58 178 163
Entity #3 | Chains: C
Coat protein VP3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54698
95 % 1 2 27866
90 % 1 2 26921
70 % 3 15 4012
50 % 32 114 408
40 % 47 158 254
30 % 60 188 148
Entity #4 | Chains: D
Coat protein VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67217
95 % 1 2 33457
90 % 3 12 5629
70 % 22 82 515
50 % 40 116 402
40 % 40 116 439
30 % 40 116 432

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.