Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 277 335 45
95 % 278 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 278 336 66
70 % 279 338 77
50 % 279 338 102
40 % 279 338 126
30 % 279 338 137
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 242 290 55
95 % 309 374 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 313 381 39
70 % 324 405 45
50 % 324 405 81
40 % 1425 1695 4
30 % 1538 1845 6
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14970
95 % 5 13 3283 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3329
70 % 5 13 3295
50 % 5 13 3211
40 % 5 13 3126
30 % 5 13 2933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1P9A 1 G Platelet glycoprotein Ib alpha chain precursor N-Terminal Domain 9606
2 1M0Z 1 A, B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606
3 4C2A 2 B PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. RESIDUES 17-306 9606
4 3P72 1 A Platelet glycoprotein Ib alpha chain UNP residues 17-281 9606
5 1OOK 4 G Platelet glycoprotein Ib alpha chain precursor N-terminal domain 9606
6 1SQ0 2 B Platelet glycoprotein Ib alpha chain (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains: Glycocalicin] Glycoprotein Ib-(alpha) 9606
7 1P8V 1 A Platelet glycoprotein Ib alpha chain Glycoprotein 1B alpha 9606
8 1QYY 1 A, G Platelet glycoprotein Ib alpha chain N-Terminal Domain 9606
9 1U0N 4 D Platelet glycoprotein Ib Alpha chain 9606
10 1GWB 1 A, B PLATELET GLYCOPROTEIN IB ALPHA CHAIN TYR 292,294,295 MODIFIED TO TYROSINE-O-SULPHONIC ACID N-TERMINAL DOMAIN, RESIDUES 16-296 9606
11 4C2B 2 B, D, F, H PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. 9606
12 3PMH 3 G Platelet glycoprotein Ib alpha chain unp residues 17-306 9606
13 1M10 2 B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606