Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 278 336 55
95 % 283 344 70 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 283 344 76
70 % 283 344 90
50 % 283 344 122
40 % 283 344 141
30 % 283 344 153
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 334 56
95 % 313 380 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 317 387 60
70 % 328 411 56
50 % 328 411 95
40 % 1583 1900 4
30 % 1592 1914 7
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8996
95 % 5 13 3674 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3727
70 % 5 13 3606
50 % 6 14 3138
40 % 6 14 3050
30 % 57 115 254

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1P9A 1 G Platelet glycoprotein Ib alpha chain precursor N-Terminal Domain 9606
2 1M0Z 1 A, B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606
3 4C2A 2 B PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. RESIDUES 17-306 9606
4 3P72 1 A Platelet glycoprotein Ib alpha chain UNP residues 17-281 9606
5 1OOK 4 G Platelet glycoprotein Ib alpha chain precursor N-terminal domain 9606
6 1SQ0 2 B Platelet glycoprotein Ib alpha chain (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains: Glycocalicin] Glycoprotein Ib-(alpha) 9606
7 1P8V 1 A Platelet glycoprotein Ib alpha chain Glycoprotein 1B alpha 9606
8 1QYY 1 A, G Platelet glycoprotein Ib alpha chain N-Terminal Domain 9606
9 1U0N 4 D Platelet glycoprotein Ib Alpha chain 9606
10 1GWB 1 A, B PLATELET GLYCOPROTEIN IB ALPHA CHAIN TYR 292,294,295 MODIFIED TO TYROSINE-O-SULPHONIC ACID N-TERMINAL DOMAIN, RESIDUES 16-296 9606
11 4C2B 2 B, D, F, H PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. 9606
12 3PMH 3 G Platelet glycoprotein Ib alpha chain unp residues 17-306 9606
13 1M10 2 B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606