Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 334 53
95 % 281 342 67 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 281 342 71
70 % 281 342 85
50 % 281 342 115
40 % 281 342 138
30 % 281 342 147
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 332 54
95 % 311 378 55 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 315 385 57
70 % 326 409 48
50 % 326 409 87
40 % 1580 1895 4
30 % 1589 1909 6
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8695
95 % 5 13 3541 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3611
70 % 5 13 3483
50 % 5 13 3390
40 % 5 13 3265
30 % 56 112 255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1P9A 1 G Platelet glycoprotein Ib alpha chain precursor N-Terminal Domain 9606
2 1M0Z 1 A, B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606
3 4C2A 2 B PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. RESIDUES 17-306 9606
4 3P72 1 A Platelet glycoprotein Ib alpha chain UNP residues 17-281 9606
5 1OOK 4 G Platelet glycoprotein Ib alpha chain precursor N-terminal domain 9606
6 1SQ0 2 B Platelet glycoprotein Ib alpha chain (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains: Glycocalicin] Glycoprotein Ib-(alpha) 9606
7 1P8V 1 A Platelet glycoprotein Ib alpha chain Glycoprotein 1B alpha 9606
8 1QYY 1 A, G Platelet glycoprotein Ib alpha chain N-Terminal Domain 9606
9 1U0N 4 D Platelet glycoprotein Ib Alpha chain 9606
10 1GWB 1 A, B PLATELET GLYCOPROTEIN IB ALPHA CHAIN TYR 292,294,295 MODIFIED TO TYROSINE-O-SULPHONIC ACID N-TERMINAL DOMAIN, RESIDUES 16-296 9606
11 4C2B 2 B, D, F, H PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. 9606
12 3PMH 3 G Platelet glycoprotein Ib alpha chain unp residues 17-306 9606
13 1M10 2 B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606