Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 279 338 45
95 % 280 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 280 339 67
70 % 281 341 78
50 % 281 341 109
40 % 281 341 132
30 % 281 341 140
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 241 290 75
95 % 311 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 315 384 48
70 % 326 408 46
50 % 326 408 84
40 % 1557 1863 4
30 % 1568 1885 6
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 15586
95 % 5 13 3419 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3471
70 % 5 13 3428
50 % 5 13 3341
40 % 5 13 3243
30 % 5 13 3042

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1P9A 1 G Platelet glycoprotein Ib alpha chain precursor N-Terminal Domain 9606
2 1M0Z 1 A, B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606
3 4C2A 2 B PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. RESIDUES 17-306 9606
4 3P72 1 A Platelet glycoprotein Ib alpha chain UNP residues 17-281 9606
5 1OOK 4 G Platelet glycoprotein Ib alpha chain precursor N-terminal domain 9606
6 1SQ0 2 B Platelet glycoprotein Ib alpha chain (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains: Glycocalicin] Glycoprotein Ib-(alpha) 9606
7 1P8V 1 A Platelet glycoprotein Ib alpha chain Glycoprotein 1B alpha 9606
8 1QYY 1 A, G Platelet glycoprotein Ib alpha chain N-Terminal Domain 9606
9 1U0N 4 D Platelet glycoprotein Ib Alpha chain 9606
10 1GWB 1 A, B PLATELET GLYCOPROTEIN IB ALPHA CHAIN TYR 292,294,295 MODIFIED TO TYROSINE-O-SULPHONIC ACID N-TERMINAL DOMAIN, RESIDUES 16-296 9606
11 4C2B 2 B, D, F, H PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. 9606
12 3PMH 3 G Platelet glycoprotein Ib alpha chain unp residues 17-306 9606
13 1M10 2 B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606