Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 335 54
95 % 281 343 69 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 281 343 74
70 % 281 343 89
50 % 281 343 118
40 % 281 343 140
30 % 281 343 151
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 333 55
95 % 311 379 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 315 386 59
70 % 326 410 52
50 % 326 410 93
40 % 1580 1898 4
30 % 1589 1912 7
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8856
95 % 5 13 3611 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3636
70 % 5 13 3552
50 % 5 13 3441
40 % 5 13 3315
30 % 56 114 252

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1P9A 1 G Platelet glycoprotein Ib alpha chain precursor N-Terminal Domain 9606
2 1M0Z 1 A, B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606
3 4C2A 2 B PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. RESIDUES 17-306 9606
4 3P72 1 A Platelet glycoprotein Ib alpha chain UNP residues 17-281 9606
5 1OOK 4 G Platelet glycoprotein Ib alpha chain precursor N-terminal domain 9606
6 1SQ0 2 B Platelet glycoprotein Ib alpha chain (Glycoprotein Ibalpha) (GP-Ib alpha) (GPIbA) (GPIb-alpha) (CD42B-alpha) (CD42B) [Contains: Glycocalicin] Glycoprotein Ib-(alpha) 9606
7 1P8V 1 A Platelet glycoprotein Ib alpha chain Glycoprotein 1B alpha 9606
8 1QYY 1 A, G Platelet glycoprotein Ib alpha chain N-Terminal Domain 9606
9 1U0N 4 D Platelet glycoprotein Ib Alpha chain 9606
10 1GWB 1 A, B PLATELET GLYCOPROTEIN IB ALPHA CHAIN TYR 292,294,295 MODIFIED TO TYROSINE-O-SULPHONIC ACID N-TERMINAL DOMAIN, RESIDUES 16-296 9606
11 4C2B 2 B, D, F, H PLATELET GLYCOPROTEIN IB ALPHA CHAIN HIGH AFFINITY MUTANT OF GPIB ALPHA WITH MUTATIONS TO REMOVE N-LINKED GLYCOSYLATION SITES, AND TWO PLATELET TYPE VWD MUTATIONS. 9606
12 3PMH 3 G Platelet glycoprotein Ib alpha chain unp residues 17-306 9606
13 1M10 2 B Glycoprotein Ib alpha von Willebrand Factor binding domain 9606