Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 334 53
95 % 281 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 281 342 67
70 % 281 342 81
50 % 281 342 112
40 % 281 342 135
30 % 281 342 146
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 274 332 52
95 % 311 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 315 385 56
70 % 326 409 47
50 % 326 409 85
40 % 1571 1885 4
30 % 1580 1899 7
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 8547
95 % 5 13 3488 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3557
70 % 5 13 3427
50 % 5 13 3340
40 % 5 13 3223
30 % 56 112 251

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures