Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 277 335 45
95 % 278 336 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 278 336 65
70 % 279 338 76
50 % 279 338 100
40 % 279 338 124
30 % 279 338 135
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 242 290 55
95 % 309 374 35 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 313 381 38
70 % 324 405 43
50 % 324 405 78
40 % 1414 1682 4
30 % 1526 1831 6
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 14604
95 % 5 13 3204 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3249
70 % 5 13 3221
50 % 5 13 3144
40 % 5 13 3063
30 % 5 13 2870

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.