Sequence Similarity Clusters for the Entities in PDB 1OOK

Entity #1 | Chains: A
Human Alpha Thrombin protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 278 336 55
95 % 283 344 70 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 283 344 76
70 % 283 344 90
50 % 283 344 123
40 % 283 344 142
30 % 283 344 154
Entity #2 | Chains: B
Human Alpha Thrombin protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 276 334 56
95 % 313 380 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 317 387 60
70 % 328 411 60
50 % 328 411 95
40 % 1583 1900 4
30 % 1592 1914 7
Entity #3 | Chains: P
PHE-PRO-ARG-Chloromethylketone protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G
Platelet glycoprotein Ib alpha chain precursor protein, length: 290 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 9017
95 % 5 13 3677 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 5 13 3732
70 % 5 13 3611
50 % 6 14 3141
40 % 6 14 3053
30 % 57 115 255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures