Sequence Similarity Clusters for the Entities in PDB 1OOA

Entity #1 | Chains: C,D
RNA aptamer rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Nuclear factor NF-kappa-B p105 subunit protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3177
95 % 2 10 3629 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 2.7
PDBFlex
90 % 2 10 3685
70 % 2 10 3622
50 % 3 12 2978
40 % 5 25 1333
30 % 5 25 1312

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.