Sequence Similarity Clusters for the Entities in PDB 1OOA

Entity #1 | Chains: C,D
RNA aptamer rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
Nuclear factor NF-kappa-B p105 subunit protein, length: 326 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3767
95 % 2 10 3885 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 2 10 3947
70 % 2 10 3870
50 % 3 12 3157
40 % 5 26 1288
30 % 5 26 1284

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures