Sequence Similarity Clusters for the Entities in PDB 1OMW

Entity #1 | Chains: A
G-protein coupled receptor kinase 2 protein, length: 689 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 11 3783
95 % 6 21 2380 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.4
PDBFlex
90 % 6 21 2442
70 % 6 21 2428
50 % 6 21 2420
40 % 6 21 2399
30 % 6 21 2294
Entity #2 | Chains: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1 protein, length: 340 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 30 1187
95 % 12 35 1354 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 12 35 1381
70 % 12 35 1399
50 % 13 36 1375
40 % 13 38 1325
30 % 13 38 1301
Entity #3 | Chains: G
Guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2 subunit protein, length: 74 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 1746
95 % 6 25 2286 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 6 25 2351
70 % 6 25 2347
50 % 6 25 2324
40 % 6 25 2312
30 % 6 25 2208

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.