Sequence Similarity Clusters for the Entities in PDB 1OMH

Entity #1 | Chains: B
DNA OLIGONUCLEOTIDE dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
trwC protein protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8824
95 % 1 7 7043 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 1 7 7025
70 % 1 7 6850
50 % 2 9 4541
40 % 2 9 4318
30 % 2 13 2613

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures