Sequence Similarity Clusters for the Entities in PDB 1OMH

Entity #1 | Chains: B
DNA OLIGONUCLEOTIDE dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
trwC protein protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8429
95 % 1 7 6725 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 7 6711
70 % 1 7 6533
50 % 2 9 4332
40 % 2 9 4121
30 % 2 13 2504

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.