Sequence Similarity Clusters for the Entities in PDB 1OM9

Entity #1 | Chains: A,B
ADP-ribosylation factor binding protein GGA1 protein, length: 154 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43809
95 % 2 2 19448 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 2 18942
70 % 3 3 13499
50 % 3 3 12005
40 % 3 3 10887
30 % 4 4 8404
Entity #2 | Chains: P,Q
15-mer peptide fragment of p56 protein, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.