Sequence Similarity Clusters for the Entities in PDB 1OM3

Entity #1 | Chains: L,M
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 1241
95 % 6 15 1466 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 307 762 2
70 % 1015 2519 1
50 % 2079 5107 1
40 % 2395 5756 1
30 % 2926 7175 1
Entity #2 | Chains: H,K
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 1624
95 % 6 14 1859 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.8
PDBFlex
90 % 6 15 1512
70 % 1006 2478 2
50 % 2080 5107 1
40 % 2396 5756 1
30 % 2927 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures