Sequence Similarity Clusters for the Entities in PDB 1OM3

Entity #1 | Chains: L,M
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 1038
95 % 6 15 1419 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 279 729 3
70 % 946 2362 1
50 % 1937 4781 1
40 % 1937 4781 1
30 % 2188 5635 1
Entity #2 | Chains: H,K
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 1346
95 % 6 14 1741 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.8
PDBFlex
90 % 6 15 1438
70 % 934 2311 2
50 % 1938 4781 1
40 % 1938 4781 1
30 % 2189 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures