Sequence Similarity Clusters for the Entities in PDB 1OM3

Entity #1 | Chains: L,M
FAB 2G12, light chain protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 15 983
95 % 6 15 1359 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 0.7
PDBFlex
90 % 259 676 3
70 % 738 1828 2
50 % 1833 4501 1
40 % 1833 4501 1
30 % 2068 5303 1
Entity #2 | Chains: H,K
FAB 2G12, heavy chain protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 13 1271
95 % 6 14 1652 Flexibility: Low
Max RMSD: 12.8, Avg RMSD: 1.7
PDBFlex
90 % 6 15 1375
70 % 886 2178 1
50 % 1834 4501 1
40 % 1834 4501 1
30 % 2069 5303 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.