Sequence Similarity Clusters for the Entities in PDB 1OKV

Entity #1 | Chains: A,C
CELL DIVISION PROTEIN KINASE 2 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 284 364 21
95 % 294 379 32 Flexibility: Low
Max RMSD: 7.4, Avg RMSD: 2.2
PDBFlex
90 % 294 379 34
70 % 294 379 41
50 % 310 404 55
40 % 323 460 43
30 % 2340 3787 2
Entity #2 | Chains: B,D
CYCLIN A2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 86 159
95 % 48 105 147 Flexibility: No
Max RMSD: 1.4, Avg RMSD: 0.4
PDBFlex
90 % 52 109 153
70 % 52 109 171
50 % 52 109 205
40 % 52 109 229
30 % 55 182 227
Entity #3 | Chains: E,F
H-ARG-ARG-LEU-ILE-PHE-NH2 protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.