Sequence Similarity Clusters for the Entities in PDB 1OKK

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 294 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 4369
95 % 7 19 2104 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.6
PDBFlex
90 % 7 19 2156
70 % 7 19 2164
50 % 7 19 2169
40 % 7 21 1848
30 % 15 54 644
Entity #2 | Chains: D
CELL DIVISION PROTEIN FTSY protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 4449
95 % 1 9 4769 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 1 9 4803
70 % 1 9 4688
50 % 3 17 2319
40 % 8 26 1342
30 % 16 54 644

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures