Sequence Similarity Clusters for the Entities in PDB 1OKK

Entity #1 | Chains: A
SIGNAL RECOGNITION PARTICLE PROTEIN protein, length: 294 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 14 2170
95 % 7 19 2058 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.6
PDBFlex
90 % 7 19 2108
70 % 7 19 2114
50 % 7 19 2117
40 % 7 21 1831
30 % 13 51 686
Entity #2 | Chains: D
CELL DIVISION PROTEIN FTSY protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 4091
95 % 1 9 4551 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.8
PDBFlex
90 % 1 9 4586
70 % 1 9 4493
50 % 3 16 2473
40 % 6 26 1370
30 % 14 51 686

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures