Sequence Similarity Clusters for the Entities in PDB 1OHH

Entity #1 | Chains: A,B,C
ATP synthase subunit alpha, mitochondrial protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 29 350
95 % 17 41 291 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.1
PDBFlex
90 % 17 41 304
70 % 21 60 169
50 % 24 72 168
40 % 24 72 183
30 % 24 72 196
Entity #2 | Chains: D,E,F
ATP synthase subunit beta, mitochondrial protein, length: 482 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 40 213
95 % 18 42 292 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.1
PDBFlex
90 % 18 42 305
70 % 25 73 141
50 % 25 73 169
40 % 25 73 184
30 % 25 73 197
Entity #3 | Chains: G
ATP synthase subunit gamma, mitochondrial protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 39 910
95 % 16 39 1221 Flexibility: Medium
Max RMSD: 8.0, Avg RMSD: 3.2
PDBFlex
90 % 16 39 1247
70 % 17 41 1214
50 % 17 41 1275
40 % 22 66 632
30 % 22 66 616
Entity #4 | Chains: H
ATPase inhibitor, mitochondrial protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71963
95 % 2 2 15254 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.8
PDBFlex
90 % 2 2 14983
70 % 2 2 14040
50 % 2 2 12457
40 % 2 2 11284
30 % 2 2 9808

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures