Sequence Similarity Clusters for the Entities in PDB 1OGY

Entity #1 | Chains: A,C,E,G,I,K,M,O
PERIPLASMIC NITRATE REDUCTASE protein, length: 802 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 7925
95 % 1 1 8468 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 8412
70 % 4 4 5409
50 % 4 4 5147
40 % 4 4 4860
30 % 4 4 4446
Entity #2 | Chains: B,D,F,H,J,L,N,P
DIHEME CYTOCHROME C NAPB MOLECULE: NITRATE REDUCTASE protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 10012
95 % 1 1 10074 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 9954
70 % 1 1 9479
50 % 1 1 8569
40 % 1 1 7853
30 % 1 1 6918

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures