Sequence Similarity Clusters for the Entities in PDB 1OGV

Entity #1 | Chains: H
REACTION CENTER PROTEIN H CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 96 337
95 % 29 97 416 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 29 97 447
70 % 29 97 485
50 % 29 97 534
40 % 46 131 441
30 % 46 131 438
Entity #2 | Chains: L
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 90 372
95 % 29 97 409 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 29 97 441
70 % 29 97 478
50 % 46 131 416
40 % 46 131 440
30 % 46 131 435
Entity #3 | Chains: M
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 56 683
95 % 29 97 412 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 29 97 444
70 % 29 97 481
50 % 46 131 417
40 % 46 131 439
30 % 46 131 434

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures