Sequence Similarity Clusters for the Entities in PDB 1OGV

Entity #1 | Chains: H
REACTION CENTER PROTEIN H CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 96 363
95 % 29 97 453 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 29 97 489
70 % 29 97 522
50 % 29 97 564
40 % 46 131 459
30 % 46 131 460
Entity #2 | Chains: L
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 90 407
95 % 29 97 448 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 29 97 485
70 % 29 97 518
50 % 46 131 432
40 % 46 131 458
30 % 46 131 458
Entity #3 | Chains: M
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 56 713
95 % 29 97 450 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 29 97 487
70 % 29 97 520
50 % 46 131 433
40 % 46 131 457
30 % 46 131 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures