Sequence Similarity Clusters for the Entities in PDB 1OGV

Entity #1 | Chains: H
REACTION CENTER PROTEIN H CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 96 324
95 % 29 97 410 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 29 97 441
70 % 29 97 480
50 % 29 97 525
40 % 46 131 432
30 % 46 131 430
Entity #2 | Chains: L
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 90 362
95 % 29 97 402 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 29 97 435
70 % 29 97 472
50 % 46 131 407
40 % 46 131 431
30 % 46 131 428
Entity #3 | Chains: M
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 56 669
95 % 29 97 406 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 29 97 438
70 % 29 97 475
50 % 46 131 408
40 % 46 131 430
30 % 46 131 427

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures