Sequence Similarity Clusters for the Entities in PDB 1OGV

Entity #1 | Chains: H
REACTION CENTER PROTEIN H CHAIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 29 96 347
95 % 29 97 435 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 0.6
PDBFlex
90 % 29 97 473
70 % 29 97 506
50 % 29 97 546
40 % 46 131 451
30 % 46 131 448
Entity #2 | Chains: L
REACTION CENTER PROTEIN L CHAIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 28 90 382
95 % 29 97 430 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 29 97 469
70 % 29 97 500
50 % 46 131 425
40 % 46 131 449
30 % 46 131 446
Entity #3 | Chains: M
REACTION CENTER PROTEIN M CHAIN protein, length: 307 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 56 700
95 % 29 97 432 Flexibility: Low
Max RMSD: 6.7, Avg RMSD: 0.8
PDBFlex
90 % 29 97 471
70 % 29 97 502
50 % 46 131 426
40 % 46 131 448
30 % 46 131 445

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures