Sequence Similarity Clusters for the Entities in PDB 1OGT

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 19 2468
95 % 5 34 1502 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 10 200 133
70 % 17 716 6
50 % 17 721 6
40 % 18 772 10
30 % 18 896 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 616 2
95 % 20 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 20 669 4
70 % 21 912 4
50 % 22 934 3
40 % 22 934 7
30 % 22 934 12
Entity #3 | Chains: C
VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR 1 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.