Sequence Similarity Clusters for the Entities in PDB 1OGA

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 212 58
95 % 12 256 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 13 310 36
70 % 34 740 6
50 % 35 754 7
40 % 35 806 9
30 % 36 930 12
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 666 2
95 % 39 681 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 39 690 4
70 % 44 944 4
50 % 45 966 3
40 % 45 966 6
30 % 45 966 9
Entity #3 | Chains: C
GILGFVFTL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN V REGION protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 9351
95 % 1 10 5309 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 1 11 4949
70 % 10 334 30
50 % 10 335 78
40 % 10 335 100
30 % 135 7175 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN C REGION protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26711
95 % 1 15 3060 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.4
PDBFlex
90 % 1 17 2590
70 % 10 344 25
50 % 10 347 72
40 % 10 347 94
30 % 136 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures