Sequence Similarity Clusters for the Entities in PDB 1OGA

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 197 52
95 % 12 246 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 13 290 36
70 % 31 687 6
50 % 31 692 6
40 % 32 742 10
30 % 32 859 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 596 2
95 % 37 639 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 37 648 4
70 % 40 878 4
50 % 41 900 3
40 % 41 900 8
30 % 41 900 14
Entity #3 | Chains: C
GILGFVFTL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN V REGION protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 12644
95 % 1 10 5008 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.2
PDBFlex
90 % 1 11 4686
70 % 4 256 72
50 % 4 287 83
40 % 4 287 102
30 % 61 5394 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN C REGION protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 12336
95 % 1 14 3051 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.4
PDBFlex
90 % 1 16 2660
70 % 4 297 45
50 % 4 300 77
40 % 4 300 95
30 % 62 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.