Sequence Similarity Clusters for the Entities in PDB 1OGA

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 195 50
95 % 12 244 55
90 % 13 284 33
70 % 31 649 7
50 % 31 654 7
40 % 32 701 11
30 % 32 817 14
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 568 2
95 % 37 611 3
90 % 37 620 4
70 % 40 847 5
50 % 41 867 5
40 % 41 867 9
30 % 41 867 13
Entity #3 | Chains: C
GILGFVFTL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN V REGION protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 12008
95 % 1 10 4728
90 % 1 11 4431
70 % 4 249 71
50 % 4 280 81
40 % 4 280 98
30 % 57 5038 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN C REGION protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 11714
95 % 1 12 3500
90 % 1 14 2958
70 % 4 290 42
50 % 4 293 75
40 % 4 293 90
30 % 58 5038 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.