Sequence Similarity Clusters for the Entities in PDB 1OGA

Entity #1 | Chains: A
HLA CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 204 52
95 % 12 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 13 302 35
70 % 31 719 6
50 % 31 724 6
40 % 32 775 10
30 % 33 899 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 31 618 2
95 % 38 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 38 671 4
70 % 41 916 4
50 % 42 938 3
40 % 42 938 7
30 % 42 938 12
Entity #3 | Chains: C
GILGFVFTL protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
T-CELL RECEPTOR ALPHA CHAIN V REGION protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 12988
95 % 1 10 5167 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 1 11 4838
70 % 4 272 51
50 % 4 303 81
40 % 4 303 99
30 % 63 5635 1
Entity #5 | Chains: E
T-CELL RECEPTOR BETA CHAIN C REGION protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 12674
95 % 1 14 3145 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.4
PDBFlex
90 % 1 16 2744
70 % 4 312 29
50 % 4 315 73
40 % 4 315 93
30 % 64 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures