Sequence Similarity Clusters for the Entities in PDB 1OF5

Entity #1 | Chains: A
MRNA EXPORT FACTOR MEX67 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61073
95 % 1 1 42910
90 % 1 1 40878
70 % 1 1 36084
50 % 1 1 30736
40 % 2 2 16044
30 % 2 2 13714
Entity #2 | Chains: B
MRNA TRANSPORT REGULATOR MTR2 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 15849
95 % 1 2 14824 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 14553
70 % 1 2 13652
50 % 1 2 12134
40 % 1 2 10993
30 % 1 2 9550

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures