Sequence Similarity Clusters for the Entities in PDB 1OF2

Entity #1 | Chains: A
HUMAN LYMPHOCYTE ANTIGEN HLA-B27 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 5902
95 % 29 34 1559 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 148 204 136
70 % 367 732 6
50 % 368 737 7
40 % 391 788 10
30 % 420 919 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 340 632 2
95 % 367 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 370 685 4
70 % 440 936 4
50 % 448 958 3
40 % 448 958 7
30 % 448 958 12
Entity #3 | Chains: C
VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures