Sequence Similarity Clusters for the Entities in PDB 1OF2

Entity #1 | Chains: A
HUMAN LYMPHOCYTE ANTIGEN HLA-B27 protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 5368
95 % 29 34 1642 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 153 209 137
70 % 377 746 6
50 % 383 760 7
40 % 402 812 9
30 % 434 939 13
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 368 675 2
95 % 377 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 380 699 4
70 % 453 953 4
50 % 461 975 3
40 % 461 975 6
30 % 461 975 9
Entity #3 | Chains: C
VASOACTIVE INTESTINAL POLYPEPTIDE RECEPTOR protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures